Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LIHC rs17058358 chr18:73546922 C/T 4.3E-13 368 19.58 20.03 0.63 KM Plot
LIHC rs17058670 chr8:28019782 A/G 1.44E-6 368 1.73 22 19.23 KM Plot
LIHC rs17063972 chr6:135011701 C/T 4.47E-13 368 0.63 24.07 19.23 KM Plot
LIHC rs17125954 chr8:17792715 A/G 2.47E-13 368 19.43 20.7 0.63 KM Plot
LIHC rs17133723 chr11:99404394 C/T 1.95E-14 368 20.05 16.7 2.62 KM Plot
LIHC rs17133729 chr11:99405945 T/C 1.35E-14 367 20.03 16.7 2.62 KM Plot
LIHC rs17135338 chr16:1498572 A/G 3.28E-7 368 19.43 22 1.87 KM Plot
LIHC rs17136419 chr16:3497450 C/G 2.95E-6 368 3.18 14.17 20.27 KM Plot
LIHC rs17422130 chr15:75340457 C/T 9.28E-9 359 19.58 20.95 1.13 KM Plot
LIHC rs17429180 chr5:145598283 A/T 7.22E-5 368 19.37 21.32 13.73 KM Plot
LIHC rs17442690 chr2:37079196 T/A 1.75E-5 366 20.45 12.17 8.73 KM Plot
LIHC rs17442739 chr2:37079418 A/G 1.56E-5 366 20.5 12.17 8.73 KM Plot
LIHC rs17491738 chr14:73475398 C/G 6.13E-6 366 20.27 13.17 4.93 KM Plot
LIHC rs17569391 chr14:73426067 C/G 3.11E-6 366 20.27 13.23 8.73 KM Plot
LIHC rs17587175 chr11:107187510 G/A 9.41E-6 366 19.7 19.17 1.87 KM Plot